PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006740
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 437aa    MW: 48198.3 Da    PI: 5.5996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006740genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G g+W+t +   g+ R++k+c++rw +yl
      Lus10006740 15 KGPWTPEEDQKLINYIQLHGYGNWRTLPLNAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.17.6e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
      Lus10006740  68 RGRFSFEEEEVIIQLHSILGNK-WSAIASRLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-24765IPR009057Homeodomain-like
PROSITE profilePS51294181062IPR017930Myb domain
SuperFamilySSF466893.41E-3112109IPR009057Homeodomain-like
SMARTSM007171.4E-121464IPR001005SANT/Myb domain
PfamPF002491.4E-151562IPR001005SANT/Myb domain
CDDcd001671.38E-111762No hitNo description
PROSITE profilePS5129425.26763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2666117IPR009057Homeodomain-like
SMARTSM007172.7E-1667115IPR001005SANT/Myb domain
PfamPF002497.1E-1568112IPR001005SANT/Myb domain
CDDcd001675.10E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGRSPLSCEK NGLKKGPWTP EEDQKLINYI QLHGYGNWRT LPLNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEEVII QLHSILGNKW SAIASRLPGR TDNEIKNYWN THIRKRLLRM  120
GIDPVTHSPR LDLLDLSAIL GSSFSSSSQP NFSRLLGLVN PEILHLATSL VSSETELQNQ  180
TQTQTQTGTF YDPPNPQYQP MVNPEFQDMT TTTMATTTTI PDEPFVEVGP SDWQRSYTLE  240
SYDHLNDYCY GTSSFDDRQT AGNTITDLST ENCFGFPPAA ASGFSTPSSS PTSLNSNSTL  300
NNVNAGSCTE DERDSYCSNM LRFEMPPSIL DLYTTLVSRV KPCVSSGSPV RACPDQHGHY  360
RPVASPRDLL DAFGGDLTSG CCGDVKLVIY RLVLCLSIHL VAAGGVVTEA HIVELVAPII  420
SEVLAFLIAY PLSPGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006740
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744481e-109JX174448.1 Linum usitatissimum clone LuBAC395P20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596793.11e-127transcription factor MYB102-like
SwissprotQ9LDR81e-105MY102_ARATH; Transcription factor MYB102
TrEMBLA0A2C9U8271e-126A0A2C9U827_MANES; Uncharacterized protein
STRINGLus100067400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-91MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]