PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006796
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 350aa    MW: 37872.3 Da    PI: 10.334
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006796genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20172221255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp    ++ +r++lg+f t+e Aa+a+++a+++++g
  Lus10006796 172 KYRGVRRRP-WGKWAAEIRDP----IKaARVWLGTFETPEAAARAYDEAALRFRG 221
                  8********.**********7....357************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32171230IPR001471AP2/ERF domain
PROSITE profilePS5103225.87172229IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22172230IPR016177DNA-binding domain
PfamPF008473.8E-14172221IPR001471AP2/ERF domain
CDDcd000181.00E-23172231No hitNo description
SMARTSM003803.7E-38172235IPR001471AP2/ERF domain
PRINTSPR003674.3E-11173184IPR001471AP2/ERF domain
PRINTSPR003674.3E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDRNNSKGKQ VIQSSANPPL TTVEVGGEMV EEVVKATPRH KLLSSEMEMS AMVSALTHVV  60
ASGGGGAGSQ FPPFPTRESS DYEVGGRRKS NNLWIGNDGF GAPPQQLPPH LPPPASGVHL  120
YRPVSYLFPP PAQGGSIINN ASQPLIQQRP QPTYQTMNNR TEDPTAGTVG RKYRGVRRRP  180
WGKWAAEIRD PIKAARVWLG TFETPEAAAR AYDEAALRFR GSKAKLNFPE NVRMVIPNTT  240
TTTNNNVPVF SQQNRFVNTM GMNRDRRPVG SSSSQLVLGV GGYYDQHQNQ NVASHHHLPQ  300
GYQFRPFLAP SPPAPLCYQP LQSSGSGEFS TAPWQGSSAG GSRETSASG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23170232366ATERF1
3gcc_A9e-23170232366ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006796
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022132518.16e-39ethylene-responsive transcription factor ABR1-like
STRINGLus100067960.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-26ERF family protein