PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006848
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 247aa    MW: 28802 Da    PI: 4.6868
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006848genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-3099157159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYG+K+vk++++pr+YY+C+s+gCpvkk+ver+++dp++v++tYeg H+h 
  Lus10006848  99 LDDGYRWRKYGKKMVKNNHNPRNYYKCSSEGCPVKKRVERDRDDPSYVITTYEGLHTHX 157
                  59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-3384157IPR003657WRKY domain
SuperFamilySSF1182901.57E-2792157IPR003657WRKY domain
PROSITE profilePS5081129.6294159IPR003657WRKY domain
SMARTSM007745.1E-3699158IPR003657WRKY domain
PfamPF031061.9E-24100156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSFNFVNNPS PHTSDDQYSY YGDSSNNATS LELSELLSLN EWADERDRDP PNWFTTTVDN  60
APIISVVDGS STATTEDNRS GEVTKERVSF KTKSEVEVLD DGYRWRKYGK KMVKNNHNPR  120
NYYKCSSEGC PVKKRVERDR DDPSYVITTY EGLHTHXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXYFELIDEL  240
LYIFYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2489156774Probable WRKY transcription factor 4
2lex_A2e-2489156774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220527.18e-44PREDICTED: probable WRKY transcription factor 50 isoform X1
RefseqXP_024033930.18e-44probable WRKY transcription factor 50 isoform X1
TrEMBLA0A067GDY41e-42A0A067GDY4_CITSI; Uncharacterized protein
TrEMBLV4UPS51e-42V4UPS5_9ROSI; Uncharacterized protein
STRINGLus100068481e-110(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-39WRKY DNA-binding protein 50