PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006951
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 225aa    MW: 25594.4 Da    PI: 6.3121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006951genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-135799754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+      +K++Ka+i + A++YI++L
  Lus10006951 57 VSERNRRKKLNERLFALRAVVPNI-----TKMDKASIIKDAINYIQEL 99
                 57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6025099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1851116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-1253104No hitNo description
SMARTSM003536.3E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1756114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-105799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEPIDNIGEE YHNYWETKMF LHNEELDSWA MDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI TKMDKASIIK DAINYIQELH EQERRIQAEI AELELESGGF  120
GGGRKKKSLK KGIYEMDLEE LPLLLRSKKK KVDDRFYDSS PIELLELRVA YMGEKTVLVS  180
LTCGKRSDTM VRLCEMFESL KLKVITANIT TVAGRLLKTV FVEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1455119980Transcription factor MYC2
5gnj_B7e-1455119980Transcription factor MYC2
5gnj_E7e-1455119980Transcription factor MYC2
5gnj_F7e-1455119980Transcription factor MYC2
5gnj_G7e-1455119980Transcription factor MYC2
5gnj_I7e-1455119980Transcription factor MYC2
5gnj_M7e-1455119980Transcription factor MYC2
5gnj_N7e-1455119980Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006951
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017674.11e-120PREDICTED: transcription factor bHLH35-like
RefseqXP_021634034.11e-120transcription factor bHLH35-like isoform X3
RefseqXP_021634035.11e-120transcription factor bHLH35-like isoform X4
SwissprotQ2HIV94e-79BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2C9UP101e-119A0A2C9UP10_MANES; Uncharacterized protein
STRINGLus100069511e-164(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-69bHLH family protein