PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007124
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 285aa    MW: 31550.9 Da    PI: 9.9546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007124genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-19150199255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr+++ +g+WvAeIr p++   r+r++lg+f+t eeAa a++ a+  l+g
  Lus10007124 150 VFRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTGEEAAMAYDTAAYMLRG 199
                  69******9.**********955...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-14150199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31150208IPR001471AP2/ERF domain
PROSITE profilePS5103222.497150207IPR001471AP2/ERF domain
SMARTSM003807.8E-35150213IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22150207IPR016177DNA-binding domain
CDDcd000182.22E-31151209No hitNo description
PRINTSPR003671.2E-10151162IPR001471AP2/ERF domain
PRINTSPR003671.2E-10173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MENFMFKDLQ LSCHHLRGGG GGGTSNHSFL LDPTIWTSSI TQPHNWAPAT AAAAADHQIQ  60
SSAPMNNPVN FLESFPNLMK VMEPISPDSP SSAANNFSSL TLFSLPLFSP AEKIVQSPSF  120
LPSKRWLSAS KTQQMKYKAG GRSVSSSEKV FRGVRQRHWG KWVAEIRLPR NRTRVWLGTF  180
DTGEEAAMAY DTAAYMLRGK YAHLNFPELK HQLKANGTTA ALLEAKLQAM KKKKKELTEQ  240
QNQAEKEEPV VNSDNNVAGV QLSRMPSLDM DMIWDALLVR DSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-20140207472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8841267e-87HQ884126.1 Linum usitatissimum clone Contig1409 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701669.14e-67PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ01e-53ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A2U1L4A22e-68A0A2U1L4A2_ARTAN; DNA-binding domain-containing protein
STRINGLus100071240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-42ERF family protein