PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007139
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 431aa    MW: 49151.1 Da    PI: 6.3792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007139genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12255306155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   Ave++++L+
  Lus10007139 255 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAVEFVRELE 306
                  79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13253309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.08E-12253310No hitNo description
SuperFamilySSF474593.27E-16254324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339254305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9255306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-9260311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MYLYQYHGGD ELLVLMQACF TEQLDEEQHH YPPFSSSHHS QSSYHHHHHE LLMKPPPPPP  60
PRHMLLQTTT STNNNNMDHL IFNTNNQSSS SSSSIISPSF DKLMSFADVM QFEDFGPKLT  120
LNQKAMITPP PTNTATDPVY FLKFPVLNDW EGDHHDHDPQ LGMITLSSSP PPPEAVHPPP  180
PPMKMLRFDA HVDETTANNN NNNNNNNEFE DNHQYQHHNH DENKNGGGGD DNIGGNKNKR  240
KRTRSVKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAVE  300
FVRELEQLLQ CLESKKRRRL YGDQPPPLTT QRQQHPIVEN NNNDDDHEQQ LLMMNLESES  360
MAENKSCLAD VEVKLLGFDA MIKVLSRRRP GQLIKAIAAL EDLQLTILHT NITIIEQTVL  420
YSFNVKVIII *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255266RMTHIAVERNRR
2315319KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007139
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574051.11e-118transcription factor FAMA isoform X2
TrEMBLA0A1Q3BIH91e-116A0A1Q3BIH9_CEPFO; HLH domain-containing protein
STRINGLus100071390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104893340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.16e-87bHLH family protein