PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007245
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 154aa    MW: 17883.2 Da    PI: 7.9697
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007245genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.7e-10741092055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Lus10007245  74 YKWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 109
                  5679*****************************985 PP
2ELK39.51.2e-132950122
          ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                 ELK++LlrKYsgyL+sLkqE+s
  Lus10007245 29 ELKNHLLRKYSGYLSSLKQELS 50
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121311.2962949IPR005539ELK domain
SMARTSM011883.5E-72950IPR005539ELK domain
PfamPF037897.9E-112950IPR005539ELK domain
PROSITE profilePS5007113.05449112IPR001356Homeobox domain
SuperFamilySSF466891.11E-2050126IPR009057Homeodomain-like
SMARTSM003894.6E-1351116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-2854115IPR009057Homeodomain-like
CDDcd000862.70E-1261113No hitNo description
PfamPF059202.2E-1769108IPR008422Homeobox KN domain
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGGSSEEEQE NSGGETELPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK  60
EARQKLLSWW ELHYKWPYPS ESEKVALAET TGLDQKQINN WFINQRKRHW KPSEDMQFMV  120
MDGLHHHPAQ NPAAALYMDA HHYMPDGPYR LGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498934.12e-84homeotic protein knotted-1 isoform X1
RefseqXP_004498975.22e-84homeotic protein knotted-1 isoform X2
RefseqXP_006433688.12e-84homeotic protein knotted-1
RefseqXP_006472353.12e-84homeotic protein knotted-1
RefseqXP_012570771.12e-84homeotic protein knotted-1 isoform X1
SwissprotO041351e-82KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1S2Y5545e-83A0A1S2Y554_CICAR; homeotic protein knotted-1 isoform X1
TrEMBLA0A2H5P6R64e-83A0A2H5P6R6_CITUN; Uncharacterized protein
TrEMBLB9R6T43e-83B9R6T4_RICCO; Homeobox protein knotted-1, putative
TrEMBLV4SGX44e-83V4SGX4_9ROSI; Uncharacterized protein
STRINGLus100072451e-109(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-67KNOTTED-like from Arabidopsis thaliana