PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007305
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 193aa    MW: 20984.5 Da    PI: 9.717
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007305genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.8e-3186144259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+++Hnh+
  Lus10007305  86 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYSSDHNHP 144
                  69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3181146IPR003657WRKY domain
SuperFamilySSF1182902.48E-2683146IPR003657WRKY domain
SMARTSM007743.2E-3685145IPR003657WRKY domain
PROSITE profilePS5081131.86987146IPR003657WRKY domain
PfamPF031065.1E-2687144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEDKYRRRSL SLLMMTSSDE VVAQEESQNE SGSPDSPPYR DAKVASTSTS SPKRSGKRGA  60
HKRVVSIPIK DVEGFRLKGE NAPPPADSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR  120
KQVERSRVDP TMLVITYSSD HNHPWPPPSR IHHHHSKPAA ATPICGEGSG GFGCGDVGYV  180
FADEGGGRVV VC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-2262146679Disease resistance protein RRS1
5w3x_D4e-2262146679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685996.17e-69probable WRKY transcription factor 65
SwissprotQ9LP561e-49WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0U1VMX93e-66A0A0U1VMX9_HEVBR; WRKY super family protein
STRINGLus100073051e-139(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-52WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]