PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007343
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 158aa    MW: 16926 Da    PI: 4.2797
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007343genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.63.7e-1277101125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C tlL+YP+G++sV C++C+ V
  Lus10007343  77 CGSCPTLLMYPYGSTSVSCSSCQSV 101
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-1274103IPR005735Zinc finger, LSD1-type
PfamPF069434.1E-1077101IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MENVSESMED IEPPPPGWES IPPSQPSLQP AALPAPQSIS PSQPSEQPTT LPPPPSSPPA  60
LPQLQPQSAH EVGLVNCGSC PTLLMYPYGS TSVSCSSCQS VTEIGTNTYM ICHDVIDYFI  120
LTITIEQRLT VVHASSVQEH NQRPPWSVIQ GHPNIVH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100073431e-107(Linum usitatissimum)