PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007348
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 454aa    MW: 50604.7 Da    PI: 9.4534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007348genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-10401448347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W+ eE+  l+++v+q+G+g Wk I         +R++ +++++w++ 
      Lus10007348 401 KWSFEEETALINGVQQFGPGAWKYILDSRRdqfDNRSAVDLIDKWRNM 448
                      8*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5176230.20618212IPR000757Glycoside hydrolase family 16
Gene3DG3DSA:2.60.120.2002.2E-10619257IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd021769.52E-14220256No hitNo description
SuperFamilySSF498992.04E-7423260IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF007224.2E-6325205IPR000757Glycoside hydrolase family 16
PROSITE patternPS01034098108IPR008263Glycoside hydrolase, family 16, active site
PROSITE profilePS512949.281394453IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-10395450IPR009057Homeodomain-like
SuperFamilySSF466892.89E-14396450IPR009057Homeodomain-like
SMARTSM007171.7E-6398451IPR001005SANT/Myb domain
CDDcd116608.55E-15400450No hitNo description
PfamPF002491.0E-7401448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MAGVLPLVTL VLLGHLLTIS EANFNQQFDI TFGDQRAQIQ NGGQQLTLSL DKFSGSGFKS  60
KNEYLFGRID MQIKLVAGNS AGTVTTFYLS SEGANHDEID FEFLGNSSGD PYLIHTNVFA  120
QGKGNREQQF YLWFDPTSAF HTYSILWNPQ RIIFLVDNIP LRVHNNLESK GVPYPSKQPM  180
KIYSSLWNAD DWATQGGRVK ADWTKAPFVA SYRNFRADAC IWSSGSSSCS SGSGFQNGAW  240
QTQGLDAAGR NRLRWIPTSL PSSSDKGKHA SHCHGPVKIA DVGETRNLFV ESKDGEIVVA  300
STPAISNQSV PVAQGGKDVH SPQHQLPTRL ASEAGNKKPA VDKKNEKHLD AQATKNVNDR  360
GDFSASSVGN MPQIETHRRL PVYPLKKYED LNLLQRRKMR KWSFEEETAL INGVQQFGPG  420
AWKYILDSRR DQFDNRSAVD LIDKWRNMTK YNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1umz_A5e-882125614249XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1umz_B5e-882125614249XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1un1_A5e-882125614249XYLOGLUCAN ENDOTRANSGLYCOSYLASE
1un1_B5e-882125614249XYLOGLUCAN ENDOTRANSGLYCOSYLASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007348
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102170.21e-139xyloglucan endotransglucosylase/hydrolase 2
RefseqXP_012077892.11e-139xyloglucan endotransglucosylase/hydrolase 2
SwissprotQ8LG581e-120XTH16_ARATH; Probable xyloglucan endotransglucosylase/hydrolase protein 16
TrEMBLW9S6K21e-138W9S6K2_9ROSA; Xyloglucan endotransglucosylase/hydrolase
STRINGLus100073480.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-10MYB_related family protein
Publications ? help Back to Top
  1. Yokoyama R,Nishitani K
    A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis.
    Plant Cell Physiol., 2001. 42(10): p. 1025-33
    [PMID:11673616]
  2. Rose JK,Braam J,Fry SC,Nishitani K
    The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature.
    Plant Cell Physiol., 2002. 43(12): p. 1421-35
    [PMID:12514239]
  3. Ermolaeva MD,Wu M,Eisen JA,Salzberg SL
    The age of the Arabidopsis thaliana genome duplication.
    Plant Mol. Biol., 2003. 51(6): p. 859-66
    [PMID:12777046]
  4. Iglesias N, et al.
    Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana.
    Plant Cell Physiol., 2006. 47(1): p. 55-63
    [PMID:16267099]
  5. Chen X,Lin WH,Wang Y,Luan S,Xue HW
    An inositol polyphosphate 5-phosphatase functions in PHOTOTROPIN1 signaling in Arabidopis by altering cytosolic Ca2+.
    Plant Cell, 2008. 20(2): p. 353-66
    [PMID:18252844]
  6. Sasidharan R, et al.
    Light quality-mediated petiole elongation in Arabidopsis during shade avoidance involves cell wall modification by xyloglucan endotransglucosylase/hydrolases.
    Plant Physiol., 2010. 154(2): p. 978-90
    [PMID:20688978]