PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007502
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 228aa    MW: 24871 Da    PI: 8.9839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007502genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-123783354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r+h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  ++e +++L
  Lus10007502 37 RSHSQAEKRRRDRINAQLSTLRKLIPKS-----DKMDKAALLGSVIEQVRDL 83
                 78*************************8.....7***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0153483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-133595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-93784No hitNo description
PfamPF000102.7E-103783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-143786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-104089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-4125166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDFTDNGDES SFPFSWSNCS FFPVHESAED KAASSSRSHS QAEKRRRDRI NAQLSTLRKL  60
IPKSDKMDKA ALLGSVIEQV RDLKSKANEV KKQFAVPSEI DEINVDFCDV GGGEENNNVF  120
FVRASLTCED RPELLSELIR MVKGQRLEIV QADITSVGGR VRSVFVFCNN GGGGGGAGGS  180
VGDGDKRSVV SGIKQSLNIV LSRIASATVP SSYRIRSKRQ RFFMPSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007502
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311240.12e-84transcription factor bHLH51 isoform X1
RefseqXP_024463294.12e-84transcription factor bHLH51 isoform X1
RefseqXP_024463295.12e-84transcription factor bHLH51 isoform X1
TrEMBLB9HHS95e-83B9HHS9_POPTR; Uncharacterized protein
STRINGLus100075021e-164(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-49bHLH family protein