PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007525

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 181aa MW: 19867.5 Da PI: 6.9306

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007525	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.2e-43	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA ar+rdP+yG+vg i+ lq+q++ql+ +lal++ Lus10007525 9 PCASCKLLRRRCAKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQDLPVERRADAVSSLVYEAGARVRDPIYGCVGAISYLQRQVSQLQMQLALAQ 106 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Lus10007525 107 AE 108 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.483	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVAGASTSPC ASCKLLRRRC AKDCIFAPYF PSHDPHKFAI VHKVFGASNV SKMLQDLPVE 60 RRADAVSSLV YEAGARVRDP IYGCVGAISY LQRQVSQLQM QLALAQAEIL CIAGQQFKAA 120 AAAPNYNLAM ISDDDNYTTN SESSLDDVVL DNNKSLFLLQ HGLQVGQNHH HDDHRQYIDF 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-46	5	110	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-46	5	110	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007525

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909748.1	8e-69	LOB domain-containing protein 12
Refseq	XP_021909749.1	8e-69	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-66	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1R3I0B7	1e-67	A0A1R3I0B7_9ROSI; Uncharacterized protein
TrEMBL	A0A1R3IK25	2e-67	A0A1R3IK25_COCAP; Uncharacterized protein
STRING	Lus10007525	1e-131	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-60	LBD family protein

Link Out ? help Back to Top
Phytozome	Lus10007525

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]