PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007618
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 187aa    MW: 21230.6 Da    PI: 8.655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007618genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-112768854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +ErrRR+++N++++ Lr  +P+      + ++Ka+i   A++YI++L
  Lus10007618 27 AERRRREKLNDRLHLLRASVPNI-----TNMTKATIIDDAIDYIQEL 68
                 7*********************6.....58***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-161985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.0021968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-102073No hitNo description
Gene3DG3DSA:4.10.280.101.4E-152382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-112574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-92768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEGQSSRKRR TSLKSEETGC KSKNLFAERR RREKLNDRLH LLRASVPNIT NMTKATIIDD  60
AIDYIQELMR NVELLSGQLE RFSADSTPDE FCDAAEEMTH CGIQEEVEVV RIDGKKLWVK  120
IVLEKRKGRF TKLIEAMTKL GLQPVHTSLT TSKGAFLISS CVETVHVDSE MAQRIKDLLL  180
QVIRVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510SRKRRT
22732ERRRRE
32833RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007618
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662693.14e-60transcription factor DYT1-like
RefseqXP_023876547.14e-60transcription factor DYT1-like
TrEMBLA0A2C9U9M55e-58A0A2C9U9M5_MANES; Uncharacterized protein
STRINGLus100076181e-134(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-43bHLH family protein