PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007758
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 244aa    MW: 26388.8 Da    PI: 10.6496
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007758genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.6e-282104198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C ++Cvl+  +     p++q +++ +++k+FG+s +l++++++p+ +r+++++sl++eA+ r+ +Pv+Gavg++++ +++++q++ e
  Lus10007758   2 SCNGCRVLRKGCGENCVLRSSLrwiptPQAQGNATLFLAKFFGRSDLLSFISSVPDPQRPALFQSLLFEACGRTVNPVNGAVGLLWSRNWHVCQAAGE 99 
                  6************************999999****************************************************************999 PP

       DUF260  94 lallk 98 
                  ++l++
  Lus10007758 100 TVLAG 104
                  88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1921107IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCNGCRVLR KGCGENCVLR SSLRWIPTPQ AQGNATLFLA KFFGRSDLLS FISSVPDPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSRN WHVCQAAGET VLAGGSLHPL PGIAAGVAPP  120
NFDESDDSCS AAGFAANQLR PAILAITGGN RNLSSSSSTS EYRRRHNAAL VGGGNERRIN  180
NRDARASFFA EESETTTFES TGGGWEKLVK TFFFFGRKKK NLSREEERKK RSRVFVGKGK  240
NKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216230RKKKNLSREEERKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068238.12e-83LOB domain-containing protein 38
SwissprotQ9SN236e-60LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A067LAV84e-82A0A067LAV8_JATCU; Uncharacterized protein
STRINGLus100077581e-177(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-61LOB domain-containing protein 38