PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007841

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ERF

Protein Properties

Length: 243aa MW: 27171.1 Da PI: 5.1348

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007841	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.9e-19	153	203	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r +lg+f+t +eAa+a+++a+ +l+g Lus10007841 153 RYRGVRQRP-WGKYAAEIRDPSR--KGSRLWLGTFDTSKEAARAYDRAAFELRG 203 69*****.******854..34***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	4.5E-36	153	217	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.106	153	211	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-23	153	212	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.6E-32	153	212	IPR001471	AP2/ERF domain
Pfam	PF00847	5.8E-14	153	203	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.4E-11	154	165	IPR001471	AP2/ERF domain
CDD	cd00018	1.50E-25	159	213	No hit	No description
PRINTS	PR00367	9.4E-11	177	193	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAEAIGAYSA FDLVVDNYQI FLDDCLFPAG VESSSSSVSC DSAISVSDYY YLDDDQVHLN 60 RNELDLETNN RPIVDLSEEK RGIVGFKRDS LGFSKSEQKF KTESSKMEPE FELIELKTTV 120 PAPSRDFVFE FGSEPKTDSR PETVRTGRGD GGRYRGVRQR PWGKYAAEIR DPSRKGSRLW 180 LGTFDTSKEA ARAYDRAAFE LRGRKAILNF PADAGKYKTD AGKDEVEAAW ERKRQRGGEG 240 GK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-26	147	213	5	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007841

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	O80341	6e-32	EF102_ARATH; Ethylene-responsive transcription factor 5
STRING	Lus10007841	1e-177	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	2e-27	ERF family protein

Link Out ? help Back to Top
Phytozome	Lus10007841

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]