PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007906
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 223aa    MW: 24478.3 Da    PI: 9.2664
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007906genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33135193159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Lus10007906 135 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGIHNHP 193
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33121193IPR003657WRKY domain
SuperFamilySSF1182909.55E-29127194IPR003657WRKY domain
PROSITE profilePS5081128.793130195IPR003657WRKY domain
SMARTSM007743.7E-38135194IPR003657WRKY domain
PfamPF031062.8E-26136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MERHEPPPPS TGEQPPPAYN NNNQNPPPDP MLYESNPLLQ IPFSSASSSL MPSLPEIDWV  60
SLLSGGGQLM QMGNSGMING AGGYNNEGNN NYYSTSTDHN KDTKKGSGGG GGAHRRKAAV  120
RPRFAFQTRS EDDILDDGYR WRKYGQKAVK NSAFPRSYYR CTHHTCSVKK QVQRLSKDTS  180
IVVTTYEGIH NHPCEKLMET LTPLLKQMQF LTAAAAAAAS RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25125192774Probable WRKY transcription factor 4
2lex_A6e-25125192774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341120.14e-75PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS34e-53WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2I4GBD05e-72A0A2I4GBD0_JUGRE; probable WRKY transcription factor 24
STRINGLus100079061e-167(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.13e-54WRKY DNA-binding protein 56