PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007907
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 372aa    MW: 39972.2 Da    PI: 6.6196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007907genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30168226259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++  C+++k+ver+++dp ++++tY+ eHnh+
  Lus10007907 168 SDVWAWRKYGQKPIKGSPYPRGYYRCSTSkACMARKQVERNRSDPGMFIVTYTAEHNHP 226
                  79************************99889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30157228IPR003657WRKY domain
PROSITE profilePS5081134.521162228IPR003657WRKY domain
SuperFamilySSF1182909.55E-26165228IPR003657WRKY domain
SMARTSM007741.1E-35167227IPR003657WRKY domain
PfamPF031064.1E-25169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MADDWDLLAV VRGCTATSTS HSSTPAAAVT TCCNSQSTVT TSSSPITSSF RLDFGSQSFP  60
SPGLDQVSRF FRRDPIGDQL HELYKPFFSR SNPPLPLPPQ NASTLVSTIS PPSPFAVDRA  120
AIPPPPPLFR NQQLLKRPLP SSSPASRSKR RKNQVKKVCQ VPAEALSSDV WAWRKYGQKP  180
IKGSPYPRGY YRCSTSKACM ARKQVERNRS DPGMFIVTYT AEHNHPAPTH RNSLAGTTRH  240
KGSSSANTPT TPPQSGGESD SSEKPCSDGT NRPSCSSPMT PADEDDLFLD FTGAESRGEE  300
PHFDVIDEEE DEGNVGAIGF SPEDSGPGDD FFVGLEELTQ LSSMAGTGNR FSGDFPTSFG  360
FPRLATTAGS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-22152229280Disease resistance protein RRS1
5w3x_D6e-22152229280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007907
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218198.16e-86WRKY transcription factor 22
TrEMBLM5X0141e-84M5X014_PRUPE; Uncharacterized protein
STRINGLus100079070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-60WRKY family protein