PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008007
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 366aa    MW: 39277.5 Da    PI: 4.51
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-36471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
   Lus10008007  47 FLTKTYQLVDDPAVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKSLLRDIQ 134
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10008007 135 RRKI 138
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5843136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-3544136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-3844136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1704.9E-4195220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPSSPVETSG EPLAIAVAAG SASGSGGGCG GGTGGTADSQ RALPTPFLTK TYQLVDDPAV  60
DDLISWNDDG STFIVWRPAE FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFAND  120
CFRRGEKSLL RDIQRRKISV ATAVPAGNPS VAAIATGGRT ISPANSGEEQ VISSTSSPAA  180
NAIILRTTSC TTTAELLDEN ERLRKENSQL SHELTQLRGL CNNIMSLMNN YSSGQVNGSI  240
SNSSPILSEG RPLDLMPSTK AGGGTPETVV GNDSRATPAA VDPISPRLFG VSIGVKRARI  300
EEEEEEEVEE EEELGEEEEE NSKDRVLELE EKPGGSEVKL EPLDRSNKKC SASNDQNKSW  360
LELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-284713610110Heat shock factor protein 1
5hdn_A5e-284713610110Heat shock factor protein 1
5hdn_B5e-284713610110Heat shock factor protein 1
5hdn_C5e-284713610110Heat shock factor protein 1
5hdn_D5e-284713610110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12232SGSGGGCGGGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029218.11e-137PREDICTED: heat stress transcription factor B-2b
RefseqXP_011029219.11e-137PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-101HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A067JRM81e-133A0A067JRM8_JATCU; Uncharacterized protein
STRINGLus100080070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-103HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]