PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008066
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 225aa    MW: 24370.3 Da    PI: 8.2294
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008066genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.96.8e-135983125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr +L YPrGA++V+CalC+t+
  Lus10008066 59 CNGCRSVLLYPRGASNVCCALCNTI 83
                 ***********************97 PP
2zf-LSD149.28.7e-1698122125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  CggCrtlL+Y+rGA+sVRC++C+tV
  Lus10008066  98 CGGCRTLLMYTRGATSVRCSCCHTV 122
                  ************************9 PP
3zf-LSD1504.9e-16136160125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+Crt+L+YP+GApsV+Ca+C++V
  Lus10008066 136 CGNCRTTLMYPYGAPSVKCAVCHFV 160
                  ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.105.2E-454159No hitNo description
TIGRFAMsTIGR010534.3E-125686IPR005735Zinc finger, LSD1-type
PfamPF069435.9E-115983IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.7E-1795124IPR005735Zinc finger, LSD1-type
PfamPF069433.7E-1398122IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.3E-13133163IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-14136160IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEGMSCKPVL ALFQRYDYHI ICRQSRCSYI HNYCLDDFCY IVLTYVYISN AAMQSQLVCN  60
GCRSVLLYPR GASNVCCALC NTITSVPPPG MDMSQLICGG CRTLLMYTRG ATSVRCSCCH  120
TVNLAPVSNQ VAHINCGNCR TTLMYPYGAP SVKCAVCHFV TNVTISNVRV QQRPNGQGAM  180
VPSTSSAMPQ SQTQTVVVEN PMSVDESGKL VSNVVVGVTT TDKK*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075549.18e-99protein LSD1 isoform X1
SwissprotQ2QMB37e-75LOL2_ORYSJ; Protein LOL2
TrEMBLG7L9L53e-98G7L9L5_MEDTR; LSD1-type zinc finger protein
STRINGLus100080661e-163(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-71LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]