PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008200
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 212aa    MW: 24106.2 Da    PI: 8.367
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008200genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.11.9e-15181701128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...v.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknra......... 77 
                  lp+G+ F Pt+++lv++yL ++++g +l+ +    v +  +d+y + ePw+L  ++++       + +++y  +k ++k+  gk+ +++         
  Lus10008200  18 LPVGCCFMPTEKQLVSHYLFNHISGLPLQNHPfcpVpVFFCDLYGSeEPWELWDRFQSqnssglsTGDDVYLITKLKHKKVAGKQLKQKkmagssnkq 115
                  799************************655333334355669998768****7433331223333344789999999988887766664478999999 PP

          NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         t+ g W+ +  d+e++  ++  vg++k + + + +++  ++  W++ ey++
  Lus10008200 116 nydrflgTSGGNWHRSDGDHEIKL-DRDFVGVRKKFSYKNLKSE--QHGLWLLSEYSI 170
                  ************************.9999*********955554..599*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-1513179IPR003441NAC domain
PROSITE profilePS5100516.96818189IPR003441NAC domain
PfamPF023652.9E-1019170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGEQQVPNHQ SSQTVDLLPV GCCFMPTEKQ LVSHYLFNHI SGLPLQNHPF CPVPVFFCDL  60
YGSEEPWELW DRFQSQNSSG LSTGDDVYLI TKLKHKKVAG KQLKQKKMAG SSNKQNYDRF  120
LGTSGGNWHR SDGDHEIKLD RDFVGVRKKF SYKNLKSEQH GLWLLSEYSI SYDGGKTCSE  180
DVICILKDHR KSDESATTKK RKFEEVNATK I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8857102e-95HQ885710.1 Linum usitatissimum clone Contig1615 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100082001e-157(Linum usitatissimum)