PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008291
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 413aa    MW: 44817.9 Da    PI: 7.0172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008291genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-182473255
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g
  Lus10008291 24 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRG 73
                 689******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.4552481IPR001471AP2/ERF domain
SMARTSM003803.4E-352487IPR001471AP2/ERF domain
CDDcd000185.22E-162481No hitNo description
PfamPF008474.8E-122473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-282481IPR001471AP2/ERF domain
PRINTSPR003671.5E-72536IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-202582IPR016177DNA-binding domain
PRINTSPR003671.5E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGAPALGEGM KGKNKKSSGR GHHRFVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEDA  60
ARAYDDAARA LRGDNARTNF ELPHPAAGGG RGGLSDNIEP FSFEEVCGTG SEAADGILGA  120
LKAKLLDGKG LRLNNNNSVG ASSSGVQLPI NHRGGKDKGT VENGNEGKKV NNNPTTQVGR  180
PPKPPPKPSQ DARIDGMDHH AMLRHQNHHH QQQQQQQQEN YQISQPDHHH QSNVNPQYHQ  240
EIDQAGVLNL NDSNYWERSK AGVSPWHAIA AATANNNGEW TDHNQQPPAA VTSYEDHQMV  300
DQWPHQHHHN VNSIDTAAAN LFTTTCSTWP TSIHDQSGIP SSPSYMNSGI NVATTSNVNV  360
NHHHHNQGGW TPSLTEQQFM QTEMGNTGWT PPPQIGGGSG WDPLLYVSSV LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-141984573Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100082910.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-15related to AP2 11