PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008374

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 177aa MW: 20072.3 Da PI: 6.896

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008374	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	92	1.5e-28	7	50	116	159
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 r PekrqrvPsaynrfikeeiqrik+snPdi+hreafs+aakn Lus10008374 7 LRAPEKRQRVPSAYNRFIKEEIQRIKTSNPDITHREAFSTAAKN 50 799****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	8.12E-6	4	47	IPR009071	High mobility group box domain
Pfam	PF04690	4.9E-27	5	50	IPR006780	YABBY protein
CDD	cd00084	0.00132	15	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKRRTDLRAP EKRQRVPSAY NRFIKEEIQR IKTSNPDITH REAFSTAAKN ILLYYGERIG 60 QTPSRGVPKH ITPDDSLGRV KGVEHSGQVS RVGYGVTPSH VGLSRKGKGI GQSSLDGRQS 120 HFHLLGHCPT TSMALDRVNV LGEEIRLMRE EMERGKQQVQ EDEEEQEDEE EDDFDY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008374

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10008374	1e-127	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-22	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10008374