PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008383

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 102aa MW: 11452.8 Da PI: 5.755

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008383	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	132.3	1.5e-41	1	82	17	97
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseas.dkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mk++lP nakisk+aket+q+cvsefisfvtseas +kc++e+rkt+ngdd++wa+++lGf+dy+ pl+ +l++yre+eg++ Lus10008383 1 MKQILPPNAKISKEAKETMQDCVSEFISFVTSEASeEKCRKERRKTLNGDDICWAMGSLGFDDYALPLRRFLQRYREVEGDS 82 9*******************************9459***************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.3E-37	1	91	IPR009072	Histone-fold
Pfam	PF00808	7.8E-20	1	56	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.29E-28	1	92	IPR009072	Histone-fold
PRINTS	PR00615	5.2E-16	19	37	No hit	No description
PRINTS	PR00615	5.2E-16	39	57	No hit	No description
PRINTS	PR00615	5.2E-16	58	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MKQILPPNAK ISKEAKETMQ DCVSEFISFV TSEASEEKCR KERRKTLNGD DICWAMGSLG 60 FDDYALPLRR FLQRYREVEG DSRSATGNFD DTAGAPHPQH P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-31	1	77	17	92	Transcription factor HapC (Eurofung)
4g92_B	1e-31	1	77	17	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008383

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084241.1	5e-49	nuclear transcription factor Y subunit B-4
Swissprot	O82248	4e-40	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A067JYD0	1e-47	A0A067JYD0_JATCU; Uncharacterized protein
STRING	Lus10008383	2e-71	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-42	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Lus10008383

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]