PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008444

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 89aa MW: 9504.84 Da PI: 7.5183

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008444	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	54.3	5.5e-17	1	55	24	83
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 ++a+ca r eLG++ d++tieWLlqqa+p i+++tgt++++a+++ ++ +ss+s Lus10008444 1 MPATCASR------ELGHKFDGETIEWLLQQAEPTIIAATGTGTIPANFStMNVWLRSSGS 55 77888866......*********************************88864444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	11.067	1	33	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.5E-16	8	60	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MPATCASREL GHKFDGETIE WLLQQAEPTI IAATGTGTIP ANFSTMNVWL RSSGSTLSAP 60 ASNMGYYRRL LLQPHFNPPS TLLPSVSV*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008444

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021901654.1	3e-28	transcription factor TCP8-like
Swissprot	Q9C518	1e-26	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A2U1PFL0	1e-27	A0A2U1PFL0_ARTAN; Transcription factor, TCP
STRING	Lus10008444	6e-59	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-18	TCP family protein

Link Out ? help Back to Top
Phytozome	Lus10008444

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]