PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008460
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 129aa    MW: 15257.4 Da    PI: 7.3561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008460genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1615114197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld..gr.sefel 92 
                  ffk+  +  +lk + l++p++f++++g +   + + tl  ++g +W++k+  + +++r   +++++GW+ F++   L  g+f+ F+++  ++ s+ e+
  Lus10008460  15 FFKII-RRESLKDKKLMIPREFVRQCGRD--LKGKATLLAPDGLRWDMKIVKDDGDDRnlkFWFKNGWQAFAEYYSLSHGEFISFQYNggRNtSSLEF 109
                  66666.666777778***********877..4458***************88666666788*************************995233455555 PP

                  EEEEE CS
           B3  93 vvkvf 97 
                   +++f
  Lus10008460 110 SITIF 114
                  55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-1812115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-1914117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.29414117IPR003340B3 DNA binding domain
SMARTSM010191.0E-1115117IPR003340B3 DNA binding domain
CDDcd100172.61E-1515115No hitNo description
PfamPF023621.5E-1315112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEFPREEDIV QPLKFFKIIR RESLKDKKLM IPREFVRQCG RDLKGKATLL APDGLRWDMK  60
IVKDDGDDRN LKFWFKNGWQ AFAEYYSLSH GEFISFQYNG GRNTSSLEFS ITIFDEKAEK  120
ERDYPSME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100084603e-90(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-16B3 family protein