PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008529
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 247aa    MW: 28204.8 Da    PI: 10.2475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008529genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-141099194
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 ff ++ ++++l  + lvlp kf++++g  +e +k +t++  +g++W++++   + +gr++++kGW  F+    ++   ++vFk++g+s+f+ +v
  Lus10008529 10 FFRIMDQKYTLDPKKLVLPVKFVANYG--EELGKVVTFNVADGKKWKIRV--GRVDGRTWFAKGWLAFAAYYSIRYAYMLVFKYNGNSCFNVRV 99
                 677888889999999********9999..45999****************..**************************************5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-206102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-188102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-138100No hitNo description
PROSITE profilePS5086312.19610103IPR003340B3 DNA binding domain
PfamPF023625.2E-111099IPR003340B3 DNA binding domain
SMARTSM010199.3E-510103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRQRRCSPNF FRIMDQKYTL DPKKLVLPVK FVANYGEELG KVVTFNVADG KKWKIRVGRV  60
DGRTWFAKGW LAFAAYYSIR YAYMLVFKYN GNSCFNVRVY GPHTAEIVYP TGGARIRTSV  120
ANDFEKIVEK AKRSEKRTIQ AAMELSLKNP SLTLVMKQYN NTTLPVGVTS APSGCVDEHL  180
LSPDCTYMKV IDSSGVKEWV IRLKRRDHRE MSACSSFVDR IECLMRAHTS FVFQLTKVDV  240
GKLWTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008529
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100085290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-21B3 family protein