PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008605

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 353aa MW: 38779.2 Da PI: 7.013

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008605	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.2e-09	174	222	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Lus10008605 174 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQ 222 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-15	170	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	172	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-7	172	228	No hit	No description
Pfam	PF00170	1.9E-8	174	222	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.46E-10	174	225	No hit	No description
CDD	cd14703	3.45E-22	175	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDAHNPIPNA PPSSSNNHHP PPPPSPAPLL SAANSNSSSF FNARPFAPPH GGHHHRRALS 60 EMNFRFPDDM AMMMMMDLSP SDPMASVGGG SSTCSQEEIG SEDDLFSTYI DVDKLTGGAG 120 KCVNRNSGEK SSRPATKHRH SNSVDGSAAY GEIMDAKKAM PPEKLAELWN LDPKRAKRIL 180 ANRQSAARSK ERKARYILEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST ENTELKIRLQ 240 AMEQQAQLRD ALNEALKKEL ERLKVATGEP ISSSESFNFG MHQFPFTPSN MFSHPQQAMP 300 SQNMHQTNNH QLSDAMQNES LARFQGLDIS SKGQQNLVKS EEYSISTSET SS*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDAHNPIPNA PPSSSNNHHP PPPPSPAPLL SAANSNSSSF FNARPFAPPH GGHHHRRALS  60
EMNFRFPDDM AMMMMMDLSP SDPMASVGGG SSTCSQEEIG SEDDLFSTYI DVDKLTGGAG  120
KCVNRNSGEK SSRPATKHRH SNSVDGSAAY GEIMDAKKAM PPEKLAELWN LDPKRAKRIL  180
ANRQSAARSK ERKARYILEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST ENTELKIRLQ  240
AMEQQAQLRD ALNEALKKEL ERLKVATGEP ISSSESFNFG MHQFPFTPSN MFSHPQQAMP  300
SQNMHQTNNH QLSDAMQNES LARFQGLDIS SKGQQNLVKS EEYSISTSET SS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008605

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017429100.1	1e-145	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	6e-94	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0L9UWB3	1e-144	A0A0L9UWB3_PHAAN; Uncharacterized protein
STRING	Lus10008605	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-87	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10008605

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]