PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008626
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 101aa    MW: 11400.9 Da    PI: 10.0219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008626genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-0529622255
                 HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +Lr llP++ + +  +     iL++++ YI++L+
  Lus10008626 29 KLRALLPHLNQRHPSRGQALKILKETCSYIRKLE 62
                 8*******8333333366678**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-62775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-52876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MSARSRRSSS SSRAQNLSED DIIMDLTLKL RALLPHLNQR HPSRGQALKI LKETCSYIRK  60
LEREVNELSG RLSALLDAVD SSNNHRDFDV DSIRTLLQQL *
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677128.15e-23transcription factor PRE4-like
SwissprotQ9LJX13e-16PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A067K4V82e-20A0A067K4V8_JATCU; Uncharacterized protein
STRINGLus100086261e-64(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.17e-17bHLH family protein