PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008641
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30356.1 Da    PI: 9.19
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008641genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-1989142356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ ++t++qle Le+ F+++ ++  +++ +L+++lgL  rq+ vWFqNrRa++k
  Lus10008641  89 KKKRLTNHQLESLETSFQEEIKLEPDRKMKLSSELGLHPRQIAVWFQNRRARWK 142
                  56679************************************************9 PP
2HD-ZIP_I/II115.92.3e-3788178191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+++q+++LE+sF+ee kLep+rK++l++eLgl+prq+avWFqnrRAR+k+kqlE+ y++Lk ++d++++e+++L++ev +Lr  l
  Lus10008641  88 QKKKRLTNHQLESLETSFQEEIKLEPDRKMKLSSELGLHPRQIAVWFQNRRARWKAKQLERLYDSLKLEFDTVSKEKHKLQEEVMKLRGML 178
                  69*************************************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-1871146IPR009057Homeodomain-like
PROSITE profilePS5007116.40684144IPR001356Homeobox domain
SMARTSM003891.8E-1587148IPR001356Homeobox domain
PfamPF000462.9E-1689142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1990151IPR009057Homeodomain-like
CDDcd000865.98E-1492145No hitNo description
PRINTSPR000318.0E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000318.0E-5124140IPR000047Helix-turn-helix motif
PfamPF021831.5E-8145178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDWNNHGNLR NNVSSSRPQD TSSFNFFYDH FPGMDMKQRG ETAAYHHQQQ QGISMSPATS  60
SEKTMSYGSS CSSYAANQQH QMMMMMDQKK KRLTNHQLES LETSFQEEIK LEPDRKMKLS  120
SELGLHPRQI AVWFQNRRAR WKAKQLERLY DSLKLEFDTV SKEKHKLQEE VMKLRGMLGE  180
QGGTRNKHHG SMAVYTDISG DETMESTPVT INRSGSRKMS AIGQHQMLMT RTENSHHMVV  240
DEYNPSVAVP TPTYWSVLPS YNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARWKAKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641676.14e-73putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5FVQ05e-71A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
TrEMBLU5GA015e-71U5GA01_POPTR; Uncharacterized protein
STRINGLus100086410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.16e-43homeobox 51