PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008804

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 180aa MW: 20111.1 Da PI: 10.2847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008804	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	27	72	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er RR++ ++++ L ++lP++ +K +K +i++ A++ I +L+ Lus10008804 27 HMMSERLRREKEKEGYTSLLSILPSD-----TKKNKNAIVTGAMRRIEELE 72 7789*******************9.....8************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-10	14	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.163	22	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-4	26	72	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-6	27	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-4	28	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MMEFQKTNWE FNGKKAGSSK QHSSFRHMMS ERLRREKEKE GYTSLLSILP SDTKKNKNAI 60 VTGAMRRIEE LEGYKQMLER RIMELEEAQL SLNHSRVAKK KVKIKVGNAT TSSGSGLGGS 120 SMLEVLYELK ALGAEPTTIK SKISHDQGFE AVMDVETQAD AEKKKKIVSR IPGSFVLES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008804

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10008804	1e-127	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10008804