PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008840
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26835.1 Da    PI: 7.2604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008840genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-194094256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++++f++eq++ Le++Fe++ ++  ++++ +Ak+lgL+ rqV +WFqN+Ra+++
  Lus10008840 40 KTKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWR 94
                 67889*************************************************9 PP
2HD-ZIP_I/II115.72.7e-3741129290
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                   krr+s+eq+k+LE+ Fe+++kLep++K+ +a+eLglqprqva+WFqn+RAR+++kq+Ekdy+ Lk+ yd+l+++ e L++e ++L  +
  Lus10008840  41 TKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWRSKQIEKDYKLLKADYDSLASRFELLQNERQSLLLQ 129
                  69**********************************************************************************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.72E-182797IPR009057Homeodomain-like
PROSITE profilePS5007117.6863696IPR001356Homeobox domain
SMARTSM003897.3E-1839100IPR001356Homeobox domain
CDDcd000861.75E-154097No hitNo description
PfamPF000467.8E-174094IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1842103IPR009057Homeodomain-like
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PfamPF021831.6E-1296137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSDQILKEAE FSPEAPDAKS ETLEPPHQAP KKRKGSSNSK TKRRFSDEQI KSLESFFESD  60
TKLEPRKKTL IAKELGLQPR QVAIWFQNKR ARWRSKQIEK DYKLLKADYD SLASRFELLQ  120
NERQSLLLQF ESLNALVEKT WGGDADICKN LEGSGQVIGS DDKTIFEPEV PQVIQNKVYT  180
SSQSSQYDGV QLMDKFQTTT EGSLAAAQEK WCSLSSSYQF DLAYGSSQWL NFWR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008840
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021644168.11e-70homeobox-leucine zipper protein ATHB-12-like
SwissprotP468978e-40ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
STRINGLus100088401e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-42homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]