PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008927
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 137aa    MW: 15433.7 Da    PI: 10.8305
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008927genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.61e-1665114555
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                  +r++r++kNRe+A rsR+RK+a++ eLe+k+  Le+eN++L+ +l+el++ 
  Lus10008927  65 RRQKRMIKNRESAARSRARKQAYTNELENKISRLEEENERLR-KLKELENI 114
                  79****************************************.99999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-1061117IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.43863107IPR004827Basic-leucine zipper domain
CDDcd147078.90E-2265111No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-1565113No hitNo description
PfamPF001702.9E-1365111IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.0E-1165107No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MGMFMPGQPV PQQVHMRAGS VMDVAYPENP VPIAPPPLIG TLSDSQMASR KRGAPDEVVV  60
KNVERRQKRM IKNRESAARS RARKQAYTNE LENKISRLEE ENERLRKLKE LENILPSAPA  120
APEPRYQLRR TSSSPF*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103412e-42AC210341.1 Populus trichocarpa clone POP085-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311917.26e-66ABSCISIC ACID-INSENSITIVE 5-like protein 2
RefseqXP_024462231.16e-66ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES32e-40AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA9PAQ21e-64A9PAQ2_POPTR; Uncharacterized protein
STRINGLus100089273e-93(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.19e-31ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]