PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008929

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 299aa MW: 32780.6 Da PI: 6.642

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008929	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.8	1.1e-08	251	273	5	27
CHHHCHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkae 27 +r++r++kNRe+A rsR+RK++ Lus10008929 251 RRQKRMIKNRESAARSRARKQEL 273 79*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-7	242	277	No hit	No description
SuperFamily	SSF57959	3.94E-6	251	278	No hit	No description
CDD	cd14707	3.66E-13	251	277	No hit	No description
PROSITE pattern	PS00036	0	254	269	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGSNGDGRGN GNQSHLQPLG RQNSLYNLTL DEVQNQLGDL GKPFSSMNLD ELLRNVWTVE 60 ANHVTGAEAE GTQMADNQTS LPRQGSLSIA GALSKKTVDE VWRDIQQSKN NGEKMSKDRH 120 STLGEMTLED FLAKAGVVGD EPIHDNDNNR DVAIAGSDSN LAAWFPQQGQ WLQYPHAQFQ 180 HPQANVMGMF MPGQPVPQQV HMGAASVMDV AYPENPVPIA PPPLIGTLSD SQMASRKRGA 240 PDEIVVKNVE RRQKRMIKNR ESAARSRARK QELENTLPSV PAAPEPRYQL RRTSSSPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008929

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015584621.1	1e-132	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_015584623.1	1e-132	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_025015910.1	1e-132	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	4e-67	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	B9HK82	1e-130	B9HK82_POPTR; Uncharacterized protein
STRING	Lus10008929	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-69	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Lus10008929

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]