PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008979

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 193aa MW: 21138.7 Da PI: 5.2467

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008979	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	125.8	1.7e-39	3	97	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r qd+++P+a ++r+m+ +lP ++kis++ ket+q+ vse+is vt ea+++c++++r+t++++d+lwa+ lGf++yve+l++yl++yre eg+ Lus10008979 3 RPQDEYIPLATITRVMRSILPPRTKISEEVKETIQKAVSEYISIVTVEANEHCRHDQRRTVTAEDVLWAMDRLGFDNYVETLSLYLTRYRESEGH 97 569****************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-38	3	104	IPR009072	Histone-fold
SuperFamily	SSF47113	4.68E-30	5	105	IPR009072	Histone-fold
Pfam	PF00808	1.6E-20	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-10	36	54	No hit	No description
PRINTS	PR00615	1.1E-10	55	73	No hit	No description
PRINTS	PR00615	1.1E-10	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MPRPQDEYIP LATITRVMRS ILPPRTKISE EVKETIQKAV SEYISIVTVE ANEHCRHDQR 60 RTVTAEDVLW AMDRLGFDNY VETLSLYLTR YRESEGHPSA PSRDPNPTPP LNPTAQHHED 120 FRPTPLMPPS PLALTLALTL APPLQQQGPN SNFQMHQGDP LLLRLGLGQG NGSGGGGEDI 180 GGSTSDQNGA QL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-38	3	93	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008979

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ902252	0.0	HQ902252.1 Linum usitatissimum cultivar CDC Bethune putative beta-galactosidase (Bgal1) and putative glycosyl transferase family 1 protein genes, complete cds; putative SUMO-activating enzyme 1A transcript gene, complete cds, alternatively spliced; putative transcription factor H2A superfamily proteins, putative protease, and hypothetical protein genes, complete cds; and putative ATP-binding cassette transporter gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556590.1	7e-43	nuclear transcription factor Y subunit B-6
Refseq	XP_025983113.1	7e-43	nuclear transcription factor Y subunit B-6
Refseq	XP_028219498.1	7e-43	nuclear transcription factor Y subunit B-6-like
Refseq	XP_028219500.1	7e-43	nuclear transcription factor Y subunit B-6-like
TrEMBL	F6LC73	1e-138	F6LC73_LINUS; Putative transcription factor H2A superfamily protein
STRING	Lus10008979	1e-139	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	9e-41	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Lus10008979

Publications ? help Back to Top
Roach MJ, et al. Development of cellulosic secondary walls in flax fibers requires beta-galactosidase. Plant Physiol., 2011. 156(3): p. 1351-63 [PMID:21596948]