PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008988
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 499aa    MW: 53185.1 Da    PI: 5.7301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008988genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.93.1e-09120196287
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  W+++ + +L++a+ e+ ++l+rg         v ++   ++ ++s +qCk+k++nl+kryk + ++ +++  +  s++ +f+q+ea
  Lus10008988 120 WSDSAISCLLDAYMEKYSQLSRG--------NVQSAEPGEPPRKSVEQCKNKIDNLKKRYKVELQRINSN-GGGGSNWHWFKQIEA 196
                  99999999999999999999999........67888889999*******************998888886.56667*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-11117197No hitNo description
Gene3DG3DSA:3.40.1160.102.4E-70243489IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.07E-56256489IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.419256490IPR015963Uridylate kinase, bacteria
CDDcd042541.59E-115259490No hitNo description
PfamPF006963.4E-25260469IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MATEDFPLID DPHAPPPPPP PPVVQPDSES AQGGGDYYPT YPDSEQEKSG SAAPATPSSK  60
RNHDQAEQQP DPASQSQSQQ YYNNNSSSSK RQRSNGKSAE PELTPNADYR TDYRKDREEW  120
SDSAISCLLD AYMEKYSQLS RGNVQSAEPG EPPRKSVEQC KNKIDNLKKR YKVELQRINS  180
NGGGGSNWHW FKQIEAIIGH SSSGGGGSKA LSAGGASVAV PAESDPSADT ATGYTRSSAA  240
AYASNLKSTK SSEPTLKWRR VVFKISGAAL AGTSQNIDPK VAMQIATEVA AVRRLGLEVA  300
IVVGARNFFC GDSWISATGL DRPTAYQIGM MGTVMNSVLL QSALEKHGIQ ARVQSAFSMP  360
ELAEPYSRLR AIRHLEKGRV VIFGGVGAGA GNPLFTTDTA AALRASELNA DALLKGTNVN  420
GIYDWQTSNS NIILDHTTFR DVVSGGATSI DMMAITYCEE NGIPVVVFNM LEPGNISRAL  480
CGEQVGTLID QAGGGMSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-6025848950279Uridylate kinase
3nwy_B2e-6025848950279Uridylate kinase
3nwy_C2e-6025848950279Uridylate kinase
3nwy_D2e-6025848950279Uridylate kinase
3nwy_E2e-6025848950279Uridylate kinase
3nwy_F2e-6025848950279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090101.10.0uncharacterized protein LOC105648348
RefseqXP_021669998.10.0uncharacterized protein LOC110657192
TrEMBLA0A067LCR40.0A0A067LCR4_JATCU; Uncharacterized protein
STRINGLus100089880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-136Trihelix family protein