PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009034

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 239aa MW: 27105.3 Da PI: 6.5118

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009034	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.2e-08	133	180	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Lus10009034 133 SHSLAERVRRGKINEKLKCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 180 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-16	127	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.58E-9	127	183	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-16	129	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.824	129	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	133	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-8	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAESSFPLLE MDYQIPQYFT ELNQFHTFTQ VPPSNFFTTH DRFDPVFDPT HHGGVVVEEN 60 IKKRKWLSME DASSSMNNTN NNISSASDDQ SGCCNNRSRG GRKRVRSNHG DGEEEKLKEV 120 VHVRARRGQA TDSHSLAERV RRGKINEKLK CLQNIVPGCY KTMGMAVMLD EIINYVQSLQ 180 NQVDFLSMKL TAASTYYDFN AEEEATLQRA KDEGREMKEG YGAMFPLINM VSLTHTYG*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009034

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020213827.1	1e-63	transcription factor BEE 3
Swissprot	Q8GWK7	3e-57	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A151TRN8	3e-62	A0A151TRN8_CAJCA; Transcription factor BEE 3
STRING	Lus10009034	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	1e-56	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	Lus10009034

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]