PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009055
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 372aa    MW: 41839.4 Da    PI: 7.347
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009055genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.5e-1090125540
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                  k +rr+++NReAAr+sR+RKka++++Le+   +L +
  Lus10009055  90 KTQRRLAQNREAARKSRLRKKAYVQQLETSRLKLAQ 125
                  89**************************84443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-885133No hitNo description
SMARTSM003380.003386143IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.25588132IPR004827Basic-leucine zipper domain
PfamPF001706.5E-789128IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-790133No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
PfamPF141445.1E-29174248IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMSSPTTQLA ILRGMGIYEP FQQISSWAAD PFRGDNILNI TPTSPIPPLD HPPPPLENRT  60
DNMSHESITE PSKSDQEGVG GRPCDNNNNK TQRRLAQNRE AARKSRLRKK AYVQQLETSR  120
LKLAQLEQEL QRARQQGMYI NNGMDFGMPG TSSSGIATFE MEYAHWIEEE HKKVSELRRA  180
LQSHIGDVEL RILVENGLAH FNSLFRIKAE AAKTDVFYII SGKWRTSVER FFLWIGGFRP  240
SELLNVLLPQ LEPLTDQQHC EVCTLRQSSQ QAEDALSQGI DKLQQTLSQS LAVDQSIGGS  300
YRVQMAAAIE RLEGLEGFAN QADHLRSQTL HHMSRILTTR QAARGLLALG EYLERLRALS  360
SLWAARPLEP T*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021656707.10.0transcription factor TGA7
RefseqXP_021656716.10.0transcription factor TGA7
SwissprotQ93ZE21e-154TGA7_ARATH; Transcription factor TGA7
TrEMBLB9RJD30.0B9RJD3_RICCO; Transcription factor TGA7, putative
STRINGLus100090550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-134bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]