PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009133

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 182aa MW: 19909.5 Da PI: 5.2465

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009133	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	222.1	2.8e-68	2	178	194	374
GRAS 194 Lrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 L+++p Ea+aVn+v++lhrll++s+ +++ vL+ +k ++Pk+v+vveqea+hn++ F++rf+eal+yys+lfdsle + +++ ++++ + Lus10009133 2 LDLRPadVEAVAVNSVFELHRLLSQSAGIDK----VLSSIKAMKPKIVTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGS---SPSQDLVMSELY 92 55666558*************88777777....*****************************************999...358899** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 lgr+i+nvvaceg +r+erhetl +Wr r+e+aGF pv+l+++a+kqa++ll+ ++ +dgy+vee++gsl+lgW++rpL+++SaW+ Lus10009133 93 LGRQICNVVACEGGDRVERHETLTQWRGRMESAGFDPVHLGSNAYKQASTLLALFAgGDGYKVEENDGSLMLGWHTRPLIATSAWQ 178 ***********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.589	1	157	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-66	2	178	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLDLRPADVE AVAVNSVFEL HRLLSQSAGI DKVLSSIKAM KPKIVTVVEQ EANHNGPVFV 60 DRFTEALHYY SSLFDSLEGS SPSQDLVMSE LYLGRQICNV VACEGGDRVE RHETLTQWRG 120 RMESAGFDPV HLGSNAYKQA STLLALFAGG DGYKVEENDG SLMLGWHTRP LIATSAWQLA 180 K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-26	10	177	213	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009133

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009334448.1	1e-115	PREDICTED: DELLA protein GAI-like
Swissprot	Q84TQ7	1e-100	GAI_GOSHI; DELLA protein GAI
TrEMBL	A0A2N9GN98	1e-113	A0A2N9GN98_FAGSY; Uncharacterized protein
TrEMBL	Q0HA72	1e-112	Q0HA72_MALDO; DELLA protein
STRING	Lus10009133	1e-133	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-96	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10009133