PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009261
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 475aa    MW: 51449.7 Da    PI: 8.5076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009261genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.3e-14302347555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h++ E++RR++iN++++ L++l+P+a      K++Ka+ L  A+eY+k Lq
  Lus10009261 302 HSQSEKKRRAKINKKLSMLQDLIPNA-----NKVDKASLLDDAIEYLKTLQ 347
                  9999*********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-14292351No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16294357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.075297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-18300375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11302347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAEHPTPSAP WFSPLSDKPY CPSPMVHDDD DGVAELVLES GQLLARRPRS GLRPLSSARL  60
SCPSRLDKLD SQCHEDEPRA AEEQHMWIDS HLVPEYKDTV DLALNNDIIP KVPDNHQVQH  120
RSKQNPITEC NLGWGPIGRL QQQPDHNEPR LHNFAHFLRP SRLLRPDGHQ STNSCSTSST  180
NGPNSSARLD RPMQRQSSAS AKTPPVESTL VESGSRSVKA LGNQLGLLAT GGATEEVGSL  240
GGDGTKFVAN IAARDKIPER GNTSVCSLAA SNNLERLKGR VHHANSNGEQ GRKRKRQSAE  300
IHSQSEKKRR AKINKKLSML QDLIPNANKV DKASLLDDAI EYLKTLQLQL QMMAMGRGLM  360
MHPMMLPGMQ APQMAPPPSM GMGMGMNMPM GLSCIPNPFS TSPVLGLPGQ MLPVPMPQLQ  420
PFGHLPVPTG GSSSNPSIPM PAVDLLGSAP MMGAINAVQN INPEFMNIDH KKAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293309RKRQSAEIHSQSEKKRR
2306311KKRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100092610.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.15e-16bHLH family protein