PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009278
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 249aa    MW: 28307.6 Da    PI: 7.2978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009278genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC  C k F++ s L  H+r+H
  Lus10009278  4 HKCRFCFKFFPNGSALGGHMRSH 26
                 79********************9 PP
2zf-C2H213.30.00025155177123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C k+F++   L  H  +H
  Lus10009278 155 YKCGTCEKVFKSYQALGGHRASH 177
                  9************9999998887 PP
3zf-C2H214.69.6e-05200222123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++Fs+   L  H r+H
  Lus10009278 200 HECPYCERVFSSGQALGGHKRSH 222
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.06E-9326No hitNo description
SMARTSM003550.1426IPR015880Zinc finger, C2H2-like
PfamPF139124.7E-4427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.06E-9150177No hitNo description
Gene3DG3DSA:3.30.160.609.9E-4153181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.8E-11154180IPR007087Zinc finger, C2H2
SMARTSM003550.097155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-5197224No hitNo description
SMARTSM003550.03200222IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723200222IPR007087Zinc finger, C2H2
PfamPF139129.8E-12200222IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKHKCRFCF KFFPNGSALG GHMRSHMISL QTSSSSSSEE EIQSSSSSGV DKFANLFFYG  60
QNSNESSEWS KDPNRRRSKR MRKKQIEEAE AAERQVSSIS DARTNEEDLA FSLMMLSRDR  120
WRPPLEIEID EDEEGEEEEE CEIIKRGTSD NNRTYKCGTC EKVFKSYQAL GGHRASHKKE  180
KLLHHVIDHR PPRPQVDKLH ECPYCERVFS SGQALGGHKR SHFIGESANS IRCSKYLGTI  240
DLNLPALG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640280.13e-52PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2023e-47ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A2P5QYI73e-51A0A2P5QYI7_GOSBA; Uncharacterized protein
STRINGLus100092780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-46C2H2-like zinc finger protein