PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009298
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 229aa    MW: 24992.9 Da    PI: 7.5728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.1e-3818117199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+k+C+++pyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lq+q+ +l+ael ++
  Lus10009298  18 PCGACKFLRRKCVKGCIFSPYFDSEQgTAHFAAVHKVFGASNASKLLMRIPPHHRLDAVVTLCYEALARVRDPVYGCVAHIFTLQHQVVNLQAELGYI 115
                  7***********************9989******************************************************************9988 PP

       DUF260  98 ke 99 
                  ++
  Lus10009298 116 QA 117
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.89517119IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3718115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSNSGGERGG GGGGAAPPCG ACKFLRRKCV KGCIFSPYFD SEQGTAHFAA VHKVFGASNA  60
SKLLMRIPPH HRLDAVVTLC YEALARVRDP VYGCVAHIFT LQHQVVNLQA ELGYIQARLA  120
NLHGTSVFGQ LTTSHQPQPP QQPHHQTTSH SLVPATTEAA GTLGCINDNY YNNYKNAVQY  180
ADNNQYNNWS EISSSSSNNM YDEEEMEEMA REFVARYLPG VRFPKPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37141127104LOB family transfactor Ramosa2.1
5ly0_B1e-37141127104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232675.12e-79PREDICTED: LOB domain-containing protein 19
RefseqXP_011090856.24e-79LOB domain-containing protein 19
SwissprotO221326e-61LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A1R3I7V52e-75A0A1R3I7V5_COCAP; Uncharacterized protein
STRINGLus100092981e-172(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-57LOB domain-containing protein 19