PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009337
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 304aa    MW: 33508.3 Da    PI: 6.3835
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009337genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.31.1e-42121121101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp eqp+kfa vh++FGasn+ k+l++lp ++reda++sl+yeA+ar+rdPvyG+vg i++lqq+l++l+ +l++++
  Lus10009337  12 PCAACKFLRRKCTSECVFAPYFPPEQPSKFATVHRVFGASNIAKILNELPASDREDAVTSLFYEADARLRDPVYGCVGYISHLQQRLKELHFNLESAR 109
                  7**********************************************************************************************999 PP

       DUF260  99 eel 101
                  ++l
  Lus10009337 110 HQL 112
                  985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.25611112IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-4212109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAMAPPVSHN SPCAACKFLR RKCTSECVFA PYFPPEQPSK FATVHRVFGA SNIAKILNEL  60
PASDREDAVT SLFYEADARL RDPVYGCVGY ISHLQQRLKE LHFNLESARH QLSCYVSPPP  120
PQIPPNFNPN PTPFPLQMMS VPTGSGVPSG QIINNNNLQQ QQPQQQQQQF HNLMEVQQQQ  180
MGPGSSTAQQ QEMIMRAYDQ QLQQLQQGGI YRGADGSVTL AGYNQIGNHQ HHHQQHHHMG  240
VSPISLEIGR DVHDGSSTVA APAVGEINGD DGGRFQLFLQ QPQQEGAEDE EETGRSRSNI  300
IGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-44101159114LOB family transfactor Ramosa2.1
5ly0_B8e-44101159114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079177.14e-59LOB domain-containing protein 36
RefseqXP_020537225.14e-59LOB domain-containing protein 36
TrEMBLA0A067K7028e-58A0A067K702_JATCU; Uncharacterized protein
TrEMBLA0A314UV371e-57A0A314UV37_PRUYE; LOB domain-containing protein 36
STRINGLus100093370.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-55ASYMMETRIC LEAVES 2-like 1