PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009351
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 284aa    MW: 31440.2 Da    PI: 4.6028
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009351genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.22.6e-33101142102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....X..TTSEEEEESXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....k..ekiweFkhksFkkgkke 92 
                   Fl+k+y++++d++++e+iswse+g++fvv+++ +fak++Lp yFkh+nf+SFvRQLn+Y    v++++++       k  ++ weF++++F++gkke
   Lus10009351  10 FLTKTYQLVDDPATDEVISWSETGSTFVVWKTADFAKDLLPVYFKHNNFSSFVRQLNTYPR--VTQPDNDLFPqgfrKivPDKWEFANDNFQQGKKE 104
                   9**********************************************************74..444443322234551569**************** PP

                   XXXXXXXXXX CS
  HSF_DNA-bind  93 llekikrkks 102
                   ll++i+r+ks
   Lus10009351 105 LLSQIRRRKS 114
                   ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-536112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-307112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-347112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-151033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-2910112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-154860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-156173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PATDEVISWS ETGSTFVVWK TADFAKDLLP VYFKHNNFSS  60
FVRQLNTYPR VTQPDNDLFP QGFRKIVPDK WEFANDNFQQ GKKELLSQIR RRKSVTATPP  120
QAQAAENGNS NNDNGDGQNN NNNSSTHSGD DMGSSSTSSP DSKNPGSTTT TTAQFADENE  180
KLRKDNESLS SELAQAKKQC DELISFLTDY VKVQPEQIDR IMRRSGNEND DDDDENDDES  240
DGGEGVKLFG VVLKCNGKKR GRAGDEESGF GVGPRAKEIK ICY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-22611226129Heat shock factor protein 1
5d5v_B3e-22611226129Heat shock factor protein 1
5d5v_D3e-22611226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256262GKKRGRA
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079229.11e-112heat shock factor protein HSF24
SwissprotP223353e-91HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A067KI291e-111A0A067KI29_JATCU; Uncharacterized protein
STRINGLus100093510.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-71heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]