PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009475
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 328aa    MW: 35847.4 Da    PI: 9.3776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009475genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1393144155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Lus10009475  93 QRMTHIAVERNRRKLMNEHLALLRSLMPPS---YVQRGDQASIVAGAIEFVKELE 144
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1591167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1291148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-1191148No hitNo description
PROSITE profilePS5088814.53892143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1093144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAATEAMLSA AAASSANEFT NFIVIYDTIS ATPCTSDTYY YPGNLAPAPA ALPPPPPPPP  60
AKVARGGGSD VGRSKKRRRK TRVCKNKEEA ETQRMTHIAV ERNRRKLMNE HLALLRSLMP  120
PSYVQRGDQA SIVAGAIEFV KELEHSLHSL QAKKLQHPSP PTPPFSQFFN HTNSTTTQDT  180
TNNNSKSTNS FNNTKTILTT PSSSSSPSSS SSNVDDDGIA GIEVTLIETH ANLRFLTRKR  240
SMNRRPWQLS KLVGGFHALR LSVLHFSLTT VHPFSLYSIS AKVEEGCQLS SVDDIAAAVH  300
HMLRLIIEQD EEDHHHGSSS LLHPHIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479KKRRRK
293104RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009475
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022731905.12e-90transcription factor bHLH71-like isoform X2
RefseqXP_022732027.12e-90transcription factor bHLH71-like isoform X1
TrEMBLA0A2K2B4795e-88A0A2K2B479_POPTR; Uncharacterized protein
STRINGLus100094750.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-51beta HLH protein 71