PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009558
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 327aa    MW: 36571.1 Da    PI: 8.7539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009558genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-0789133444
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrw 44 
                      W+++E + l  +v+++G ++W+tI r         Rt+k++ ++w
      Lus10009558  89 WSEQELDSLWIGVRRHGRDNWHTILRDPRlhfpPWRTPKHLADKW 133
                      ********************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.35381137IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-584135IPR009057Homeodomain-like
SuperFamilySSF466895.81E-987135IPR009057Homeodomain-like
CDDcd116601.80E-989133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTCIPSSSSL NLDLSLKMEL KTGNFSSRTP CSQLPPWNEE RRQFTRAEVT ENHRTSFLRQ  60
RMLLDRIANK ASRLNSNGAF QDRIDASLWS EQELDSLWIG VRRHGRDNWH TILRDPRLHF  120
PPWRTPKHLA DKWEEEQVKL LDGKHPTSCP VTWDGFSAES NLPSSAAAQF HGPCGAKFKR  180
RSRNARDQVY IPQGYYRSGA PCSNILGEAY GKLPFSYLGA SRGNLPHWLK EAVTTPRPIE  240
VTPPRVVASL AHCGLTQVVR PCSHSCETET GLRNKIPGGE LQVIGIRNGV TLPSSNPLHR  300
VNKPDDFVRV DSDASSEETI SDDQGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100095580.0(Linum usitatissimum)