PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009567
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 108aa    MW: 12107.7 Da    PI: 7.8646
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009567genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260415.3e-13496188
       DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasn...vlkllkalpeeer...edamsslvyeAearardPvyGavgvilklqqqle 88
                 +Ca C + rr+C++dC + pyfp ++ ++f+ + +++  ++   + + l++lp   r   ++ ++ ++   +a +r+Pv Ga + + + q qle
  Lus10009567  4 RCARCTYSRRACPADCRFMPYFPPNS-EDFQLIVQVYKSQTsgfLDRSLADLPGPGRqydRECFDGIMHVVRAHLRNPVGGARAELAAAQFQLE 96
                 6**********************987.89********8765222456667776555545599***********************999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.8363107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-10496IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGDRCARCTY SRRACPADCR FMPYFPPNSE DFQLIVQVYK SQTSGFLDRS LADLPGPGRQ  60
YDRECFDGIM HVVRAHLRNP VGGARAELAA AQFQLEFQYG HPPPPQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100095672e-74(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-14LOB domain-containing protein 24