PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009614
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 194aa    MW: 21658.6 Da    PI: 4.8867
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009614genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB72.47.5e-2349132386
        NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                  ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c +e+++ti+++ +l al  lGf +y+e++ + 
  Lus10009614  49 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSKEDKRTIAPEHVLKALEVLGFGEYIEEVYAA 132
                  6899***************************************************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-3846176IPR009072Histone-fold
SuperFamilySSF471132.18E-3450178IPR009072Histone-fold
PfamPF008082.0E-2052117IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPPPPPPPQL PNPLDRYSRR PTSSRNSDPD HPRLGQKKMD PMDIVGKAKE DASLPKATMT  60
KIIKEMLPPD VRVARDTQDL LIECCVEFIN LISSESNEVC SKEDKRTIAP EHVLKALEVL  120
GFGEYIEEVY AAYEQHKLET MQDTLKVGKW SGSVMTEEEA AAEQQRMFAE ARARMNGGVP  180
SPKQPEDDRS VQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B9e-335017212133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021647608.14e-97protein Dr1 homolog isoform X1
SwissprotP495922e-92NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A067J8H82e-95A0A067J8H8_JATCU; Uncharacterized protein
TrEMBLG7JT122e-95G7JT12_MEDTR; Nuclear transcription factor Y protein
STRINGLus100096141e-141(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-95nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]