PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009673

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 237aa MW: 26862.9 Da PI: 6.3996

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009673	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.2e-08	132	179	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Lus10009673 132 SHSLAERVRRGKINEKLKCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 179 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-16	126	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.40E-9	126	182	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-16	128	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.824	128	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	132	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-8	134	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAESSFPLLE MDYQIPQFTE LNQFHTFTQI PPSNFFTTHD RFEPDFDPAR HGGVVVEEDI 60 KKRKWLSMKD ASSSMNNNTN NNNISSASDD QSGSCNNRGG RKRVRSNHGN DDEEKLKEVV 120 HVRARRGQAT DSHSLAERVR RGKINEKLKC LQNIVPGCYK TMGMAVMLDE IINYVQSLQN 180 QVDFLSMKLT TASTYYDFNA QEEAMDALQR AKDEGREMKE GYGGGFPCFH SSTWSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009673

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022735381.1	3e-73	transcription factor BEE 1-like isoform X1
Swissprot	Q8GWK7	2e-64	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A061FU69	2e-67	A0A061FU69_THECC; BR enhanced expression 1
STRING	Lus10009673	1e-180	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	2e-63	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	Lus10009673

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]