PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009697

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SRS

Protein Properties

Length: 155aa MW: 17130.6 Da PI: 9.5037

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009697	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	106.6	3.9e-33	81	146	3	68
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaa 68 s ta+CqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvp+a+rrerq ++a + s +++s++ Lus10009697 81 SSTATCQDCGNQAKKDCPHRRCRTCCKSRGFDCATHVKSTWVPSARRRERQLMTAPSRSYDTTSSH 146 67899*********************************************9999988776666553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-29	83	140	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	85	127	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDGGDHDHHH NLFQRKIGSS NSSGIQFWQH YNNSIKKTNP PSSSILDPNN NANNNNNNNN 60 NNPPQSGGVV MNSMMATTSS SSTATCQDCG NQAKKDCPHR RCRTCCKSRG FDCATHVKST 120 WVPSARRRER QLMTAPSRSY DTTSSHHHQD AGFR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009697

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634050.1	2e-37	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q9XGX0	6e-26	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2C9WM92	4e-36	A0A2C9WM92_MANES; Uncharacterized protein
STRING	Lus10009697	1e-111	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25300	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.3	1e-26	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Lus10009697

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]