PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009726
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 148aa    MW: 16242.3 Da    PI: 9.7204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009726genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.0006127493455
                 TTS-.STCHHHHHHHHHHHHHHH CS
          HLH 34 pskK.lsKaeiLekAveYIksLq 55
                 ++kK   Ka++L  A++Y+k+ q
  Lus10009726 27 DCKKrTAKASVLGDAIKYLKQVQ 49
                 5566699*************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-42860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGIGGKERRE EDPAVADAAG GSNEEADCKK RTAKASVLGD AIKYLKQVQE QSKTLEEQVK  60
RKIIKTVVYV TKSRVYNVND DALSSSTDEN SDGFSFKQTL QFPEFKVGVS GKDVMIRIHM  120
ARLGITDSWG GWNIIRGTIT RNKKDAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107640.22e-20transcription factor bHLH18
TrEMBLA0A059ALQ33e-19A0A059ALQ3_EUCGR; Uncharacterized protein (Fragment)
TrEMBLW9SFB85e-19W9SFB8_9ROSA; Uncharacterized protein
STRINGLus100097261e-104(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-14bHLH family protein